To run the Vina protocol (Windows):

1) Move into a given folder (e.g. PINC/cdk2)

2) Copy the RunPrep, RunPrepLigand, and RunDock scripts locally.

3) Source the RunPrep script, which converts the proteins to pdbqt format, builds the binding site definition, prepares
   the ligands, and constructs the RunAllProteinDocking script.

4) Source the RunAllProteinDocking script. This runs everything, including clustering final results and calculating RMSD
   against the crystallographic conformers.

