# Run the docking to the ensemble of five structures:
sf-dock.exe -lmatch KnownPoses.mol2 -pquant gdock_list pqmols.sfdb mpro-targets logdockq

# Construct pose families using information from prior known poses:
sf-dock.exe -poseprob 0.000001 -posehints KnownPoses.mol2 posefam logdockq

# Calculate automorph-corrected RMSD for the top N pose families for
# N = 1, 2, 5, and 10:
sf-dock.exe rms_fam TestRefClean.mol2 logdockq sfdock-rmsquant01 1
sf-dock.exe rms_fam TestRefClean.mol2 logdockq sfdock-rmsquant02 2
sf-dock.exe rms_fam TestRefClean.mol2 logdockq sfdock-rmsquant05 5
sf-dock.exe rms_fam TestRefClean.mol2 logdockq sfdock-rmsquant10 10
