To run the Gnina protocol (Linux):

1) Move into a given folder (e.g. PINC/cdk2) where the Vina protocol has already been run.

2) Copy the Gnina RunDock script locally and execute it for each ligand (see TestNames)

3) Source the RunGninaFam script to cluster final results and calculate RMSD against the crystallographic conformers.

NOTE: This is a brittle procedure that relies on the names of files being as provided.
